Lingua SEO Friendly URLs

Maybe you can make it work, if you append the .htaccess file.
Add the following line above the existing part for friendly URLs

# The new line to convert languages in the path to a GET parameter
RewriteRule ^(en|fr|es)/(.*)$ $2?lang=$1 [QSA,DPI]

# The (already existing) Friendly URLs part
RewriteCond %{REQUEST_FILENAME} !-f
RewriteCond %{REQUEST_FILENAME} !-d
RewriteRule ^(.*)$ index.php?q=$1 [L,QSA]

This line should convert a request that starts with en/ like https://mydomain.com/en/about to the usual format https://mydomain.com/about?lang=en.
Add all the languages you want to support to this list (en|fr|es) in the pattern.

This alternative line should also work:

RewriteRule ^(en|fr|es)/(.*)$ index.php?q=$2&lang=$1 [L,QSA]

To generate the URLs in the new format you probably have to change this line in the snippet lingua.selector

$language['url'] = $pageURL . (!empty($hasQuery) ? '&' : '?') . $langKey . '=' . $language[$codeField];

where the language ($language[$codeField]) is appended to the URL $pageURL.
It seems that $pageURL may or may not already contain the part for the language, so you probably have to use preg_match and preg_replace to either change the language part in $pageURL or add it.